STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
araAArabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose. (511 aa)    
Predicted Functional Partners:
araB
Ribulokinase.
 
 0.999
GAT87426.1
L-ribulose-5-phosphate 4-epimerase.
 
 0.997
GAT88027.1
alpha-N-arabinofuranosidase.
 
 
 0.915
GAT89169.1
alpha-N-arabinofuranosidase.
 
 
 0.914
GAT87429.1
Xylulokinase; Belongs to the FGGY kinase family.
 
 
 0.870
GAT87424.1
Galactose mutarotase.
  
  
 0.808
xylA
Xylose isomerase; Belongs to the xylose isomerase family.
 
   
 0.807
GAT88363.1
PTS lactose transporter subunit IIC.
   
  
 0.747
GAT88423.1
Aldolase.
  
 
 0.699
GAT87404.1
Carbohydrate kinase.
  
 
 0.668
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
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