Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
GAT87437.1LacI family transcription regulator. (345 aa)    
Predicted Functional Partners:
GAT89365.1
Hypothetical protein.
  
     0.774
GAT87438.1
Endo-1,4-beta-xylanase.
       0.773
GAT88889.1
LacI family transcriptional regulator.
  
     0.773
GAT89726.1
LacI family transcriptional regulator.
  
     0.770
GAT89634.1
Transcriptional regulator.
  
     0.769
GAT88205.1
Glutamate synthase.
    
 
 0.737
GAT87829.1
Hypothetical protein.
  
     0.706
GAT87434.1
Xylose isomerase.
 
    0.661
xdh
Oxidoreductase; Catalyzes the NADP(+)-dependent oxidation of D-xylose. Is able to use both NADP(+) and NAD(+); however, the enzyme shows a very strong preference for NADP(+). Is likely involved in the first step of the oxidative D-xylose degradation pathway. Belongs to the Gfo/Idh/MocA family.
 
     0.647
GAT87435.1
Hypothetical protein.
 
     0.645
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
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