Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GAT87533.1Hypothetical protein. (234 aa)    
Predicted Functional Partners:
GAT86005.1
Chorismate mutase.
      0.733
GAT88205.1
Glutamate synthase.
    
 0.668
GAT85486.1
Histidine kinase.
  
  
 0.580
GAT88096.1
Hypothetical protein.
  
     0.576
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.576
GAT87534.1
phytanoyl-CoA dioxygenase.
 
     0.560
GAT88371.1
AraC family transcriptional regulator.
  
     0.544
GAT87103.1
NAD-dependent deacetylase.
  
    0.476
carA
Carbamoyl phosphate synthase small subunit; Belongs to the CarA family.
 
  
  0.465
GAT86108.1
AraC family transcriptional regulator.
 
 
 0.435
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
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