STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT87534.1phytanoyl-CoA dioxygenase. (283 aa)    
Predicted Functional Partners:
GAT85770.1
Cytochrome P450.
     
 0.742
GAT89248.1
Mannose-6-phosphate isomerase.
    
 0.621
GAT88639.1
Arylsulfatase.
  
     0.597
GAT87533.1
Hypothetical protein.
 
     0.571
GAT87945.1
Alanine--glyoxylate aminotransferase.
    
  0.566
GAT87231.1
Glycoside hydrolase.
  
     0.508
GAT85687.1
Taurine dioxygenase.
 
 
 0.507
GAT87121.1
Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
  
    0.456
GAT85623.1
Hypothetical protein.
  
     0.433
GAT87080.1
Hypothetical protein.
  
     0.425
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
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