Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GAT87575.1Anti-sigma factor. (223 aa)    
Predicted Functional Partners:
GAT87574.1
RNA polymerase sigma 70; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.997
GAT85582.1
Drug:proton antiporter.
   
  
 0.656
GAT87572.1
Hypothetical protein.
 
     0.605
GAT85981.1
RNA polymerase sigma factor SigK; Belongs to the sigma-70 factor family. ECF subfamily.
   
 
 0.558
GAT87321.1
Hypothetical protein M707_15010; Belongs to the sigma-70 factor family. ECF subfamily.
  
   0.542
GAT87573.1
Hypothetical protein.
       0.515
GAT86885.1
Hypothetical protein.
   
   0.473
GAT85498.1
Hypothetical protein; Belongs to the sigma-70 factor family. ECF subfamily.
   
   0.473
GAT87184.1
Hypothetical protein; Belongs to the sigma-70 factor family. ECF subfamily.
   
   0.473
GAT87522.1
Sigma-70 family RNA polymerase sigma factor.
   
   0.473
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
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