Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GAT87583.1AsnC family transcriptional regulator. (345 aa)    
Predicted Functional Partners:
GAT85352.1
XRE family transcriptional regulator.
  
    0.659
GAT87582.1
Amidohydrolase.
       0.549
GAT87633.1
Histidine kinase.
  
     0.520
GAT87758.1
AsnC family transcriptional regulator.
  
     0.519
GAT87022.1
Phosphomethylpyrimidine kinase.
   
 
  0.513
GAT86403.1
LuxR family transcriptional regulator.
  
     0.506
GAT87581.1
Major facilitator transporter.
       0.481
GAT89216.1
Alpha/beta hydrolase.
  
     0.467
GAT88543.1
MFS transporter.
  
     0.461
GAT89558.1
Hypothetical protein.
  
     0.460
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
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