Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
GAT87723.1Hypothetical protein. (318 aa)    
Predicted Functional Partners:
GAT87722.1
Hypothetical protein.
      0.819
GAT87721.1
Major facilitator superfamily permease.
       0.773
GAT89647.1
Oxidoreductase.
     0.623
GAT88511.1
Hypothetical protein.
    
  0.603
GAT89094.1
Hypothetical protein.
  
     0.584
GAT87720.1
Hypothetical protein.
       0.527
GAT89099.1
2-oxo-hept-3-ene-1,7-dioate hydratase.
  
 
 0.481
GAT89100.1
alpha-dehydro-beta-deoxy-D-glucarate aldolase; Belongs to the HpcH/HpaI aldolase family.
  
 
 0.481
leuC
Isopropylmalate isomerase; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.
  
 
  0.404
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
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