STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT85365.1Alpha-galactosidase. (723 aa)    
Predicted Functional Partners:
GAT85663.1
Beta-galactosidase.
 
 
 0.956
GAT85569.1
Glycosyl hydrolase family 32.
 
  
 0.917
GAT85423.1
Beta-galactosidase.
    
 0.906
GAT85872.1
Beta-galactosidase.
    
 0.897
GAT89334.1
Glycoside hydrolase; Belongs to the glycosyl hydrolase 32 family.
    
 0.894
GAT89286.1
Alpha-amylase.
   
 
 0.858
GAT85685.1
Glycosidase.
  
 
 0.856
GAT89282.1
Alpha-amylase.
  
 
 0.855
GAT87424.1
Galactose mutarotase.
 
  
  0.834
GAT86465.1
Aldose epimerase.
 
  
  0.822
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
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