Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
GAT87868.1Monooxygenase. (365 aa)    
Predicted Functional Partners:
GAT87866.1
Peptide ABC transporter.
 
     0.829
GAT87873.1
Alkanesulfonate monooxygenase.
  
    0.765
GAT87867.1
Monooxygenase.
 
    
0.720
GAT87399.1
ABC transporter substrate-binding protein.
 
  
  0.706
GAT87390.1
Amino acid-binding protein.
 
  
  0.691
GAT87864.1
Peptide ABC transporter permease.
 
     0.670
GAT87865.1
Peptide ABC transporter permease.
 
     0.654
GAT85687.1
Taurine dioxygenase.
 
 
  0.652
GAT87387.1
Hypothetical protein.
     0.604
GAT87863.1
Glutathione ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
       0.599
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
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