Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GAT87882.1Glycosyl transferase. (381 aa)    
Predicted Functional Partners:
GAT86805.1
Hypothetical protein.
 
  
 0.664
GAT86804.1
Hypothetical protein.
 
  
 0.651
GAT86900.1
Hypothetical protein G205_15060.
  
  0.611
GAT86901.1
Hypothetical protein.
  
  0.611
GAT88726.1
Hypothetical protein.
  
  0.611
GAT85486.1
Histidine kinase.
  
  
 0.601
GAT87883.1
Hypothetical protein.
       0.601
GAT87211.1
Chromosome partitioning protein.
  
   0.463
GAT88690.1
Chromosome partitioning protein ParA.
  
   0.463
GAT88706.1
Chromosome partitioning protein ParA.
  
   0.463
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
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