Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GAT87993.1Hypothetical protein. (203 aa)    
Predicted Functional Partners:
GAT87161.1
Hypothetical protein.
 
  
 0.776
GAT89421.1
XRE family transcriptional regulator.
  
     0.751
GAT89494.1
XRE family transcriptional regulator.
  
     0.714
GAT87994.1
Hypothetical protein.
  
    0.496
purC
Phosphoribosylaminoimidazole-succinocarboxamide synthase; Belongs to the SAICAR synthetase family.
     
  0.482
purM
Phosphoribosylaminoimidazole synthetase.
     
  0.482
GAT88379.1
Polyamine ABC transporter permease.
 
     0.418
GAT85486.1
Histidine kinase.
     
 0.414
GAT85936.1
Thiamine biosynthesis protein ThiS.
    
  0.404
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
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