Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
GAT88019.1LacI family transcription regulator. (349 aa)    
Predicted Functional Partners:
GAT88205.1
Glutamate synthase.
    
 
 0.737
GAT88020.1
Hypothetical protein; Belongs to the glycosyl hydrolase 32 family.
  
    0.645
GAT88021.1
Hypothetical protein.
  
    0.622
GAT88017.1
Sugar ABC transporter permease.
    
  0.613
GAT88018.1
ABC transporter permease.
    
  0.612
GAT88016.1
Sugar ABC transporter substrate-binding protein.
 
  
  0.584
GAT88022.1
Fructotransferase.
       0.540
ribB
Hypothetical protein; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate.
    
   0.421
pheT
phenylalanyl-tRNA synthetase subunit beta; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
    
   0.421
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
    
   0.421
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
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