STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT85612.1PucR family transcriptional regulator. (480 aa)    
Predicted Functional Partners:
GAT89482.1
PucR family transcriptional regulator.
  
     0.706
GAT86126.1
Hypothetical protein.
  
     0.681
GAT89558.1
Hypothetical protein.
  
     0.672
GAT86258.1
Membrane protein.
  
     0.642
GAT86135.1
Hypothetical protein.
  
     0.638
GAT87383.1
Hypothetical protein.
  
     0.626
GAT85610.1
GntR family transcriptional regulator.
  
    0.596
GAT85611.1
MFS transporter.
       0.586
GAT86144.1
Hypothetical protein.
  
     0.558
GAT85613.1
Gamma-aminobutyraldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
       0.531
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
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