Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GAT85621.1Sugar ABC transporter ATPase. (347 aa)    
Predicted Functional Partners:
GAT85622.1
ABC transporter permease.
 
 
  0.994
GAT85623.1
Hypothetical protein.
 
 
  0.993
GAT86312.1
Sugar ABC transporter substrate-binding protein.
 
 
  0.980
GAT86313.1
ABC transporter permease.
  
 
  0.976
GAT86314.1
Sugar ABC transporter ATPase.
  
  
 
0.904
GAT88812.1
Hypothetical protein.
 
  0.897
GAT88813.1
ABC transporter permease.
  
 
  0.886
GAT85421.1
Sugar ABC transporter permease.
  
 
  0.708
GAT85420.1
ABC transporter permease.
  
  
 
0.699
GAT85624.1
Hypothetical protein.
 
     0.666
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.