STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT88152.1Potassium transporter TrkA. (244 aa)    
Predicted Functional Partners:
GAT88153.1
Potassium transporter TrkA.
 
  
 0.966
GAT85523.1
Potassium transporter Trk.
  
 0.895
GAT85402.1
Potassium transporter Trk.
  
 0.895
GAT88154.1
DNA-binding protein.
 
     0.872
GAT88185.1
rRNA cytosine-C5-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
  
   0.643
GAT88155.1
SAM-dependent methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
       0.615
GAT88572.1
Molybdenum cofactor biosynthesis protein MoaE.
   
    0.546
GAT88478.1
Selenocysteine synthase.
   
    0.497
GAT88156.1
Aconitate hydratase.
       0.473
GAT86371.1
Uroporphyrinogen III synthetase.
  
    0.438
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
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