Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GAT88208.1Transcriptional regulator. (201 aa)    
Predicted Functional Partners:
GAT86028.1
ATPase.
 
   
 0.851
GAT86703.1
30S ribosomal protein S1.
  
    0.679
GAT86475.1
ABC transporter substrate-binding protein.
  
   0.620
GAT88981.1
Histidine kinase.
 
     0.618
GAT87634.1
Transcriptional regulator.
  
     0.617
GAT86276.1
Hypothetical protein.
  
     0.609
GAT87105.1
Hypothetical protein.
   
    0.572
atpD-2
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
   
    0.568
GAT86277.1
Hypothetical protein.
  
    0.538
GAT89072.1
Histidine kinase.
 
     0.513
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
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