Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GAT88227.1Type IV secretory pathway, VirD4 protein. (600 aa)    
Predicted Functional Partners:
GAT88226.1
Hypothetical protein.
 
  
 0.957
GAT88228.1
Hypothetical protein MIC448_1870005.
 
     0.951
GAT88225.1
Hypothetical protein.
 
     0.946
GAT88229.1
Hypothetical protein.
 
    0.901
GAT88224.1
Hypothetical protein.
     
 0.806
GAT88233.1
Hypothetical protein.
 
   
 0.802
GAT88223.1
Hypothetical protein.
       0.746
GAT89590.1
ATP/GTP-binding protein.
 
  
 0.577
GAT89591.1
Membrane protein.
 
   
 0.536
GAT88220.1
Hypothetical protein.
 
     0.521
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
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