Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GAT88496.1Hypothetical protein. (323 aa)    
Predicted Functional Partners:
GAT88495.1
Hypothetical protein.
 0.998
GAT87716.1
ABC transporter; Belongs to the binding-protein-dependent transport system permease family.
 0.985
GAT88494.1
Hypothetical protein; Belongs to the ABC transporter superfamily.
  0.976
GAT86002.1
Peptide ABC transporter permease.
 0.959
GAT87168.1
Peptide ABC transporter permease.
 0.952
GAT87864.1
Peptide ABC transporter permease.
 0.952
GAT88497.1
Hypothetical protein.
 
 0.951
GAT89296.1
Peptide ABC transporter permease.
 0.947
GAT89291.1
Hypothetical protein; Belongs to the ABC transporter superfamily.
 0.946
GAT88268.1
ABC transporter permease.
 0.945
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
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