STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT88499.1ArsR family transcriptional regulator. (208 aa)    
Predicted Functional Partners:
GAT87138.1
Urea amidolyase.
  
    0.748
GAT87355.1
IclR family transcriptional regulator.
  
     0.743
GAT87331.1
IclR family transcriptional regulator.
  
     0.736
GAT89540.1
Hypothetical protein.
  
     0.733
GAT89880.1
IclR family transcriptional regulator.
  
     0.711
GAT86684.1
IclR family transcriptional regulator.
  
     0.710
GAT87245.1
Hypothetical protein.
  
     0.684
GAT87100.1
IclR family transcriptional regulator.
  
     0.682
GAT87366.1
IclR family transcriptional regulator.
  
     0.669
GAT88501.1
tRNA-processing ribonuclease BN.
 
     0.624
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.