Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GAT85663.1Beta-galactosidase. (1028 aa)    
Predicted Functional Partners:
GAT85872.1
Beta-galactosidase.
 
 
 0.979
GAT85365.1
Alpha-galactosidase.
 
 
 0.961
GAT89300.1
beta-N-acetylhexosaminidase.
  
 0.930
GAT87424.1
Galactose mutarotase.
 
 
 0.928
araA
Arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
  
  
  0.921
GAT86465.1
Aldose epimerase.
  
 
 0.915
GAT87597.1
Exo-alpha-sialidase.
    
 0.905
GAT88074.1
Sialidase.
    
 0.905
GAT87713.1
ROK family transcriptional regulator.
     
 0.900
GAT88686.1
Glucokinase.
     
 0.900
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
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