Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
GAT85669.1Hypothetical protein. (427 aa)    
Predicted Functional Partners:
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
    0.528
GAT85668.1
acyl-CoA dehydrogenase.
       0.488
GAT87648.1
Glycosyl hydrolase.
  
     0.477
GAT85486.1
Histidine kinase.
    
 
 0.471
GAT86428.1
Hypothetical protein.
  
     0.435
GAT86579.1
Putative two-component histidine kinase.
    
   0.417
GAT86646.1
Histidine kinase.
    
   0.417
GAT87633.1
Histidine kinase.
    
   0.417
GAT87777.1
Histidine kinase.
    
   0.417
GAT86277.1
Hypothetical protein.
    
   0.417
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
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