Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GAT88677.1Transcriptional regulator. (117 aa)    
Predicted Functional Partners:
GAT88678.1
Hypothetical protein.
       0.773
GAT88654.1
Cell division protein.
  
     0.705
GAT86079.1
DtxR family transcriptional regulator.
   
    0.681
GAT88679.1
Lytic transglycosylase.
       0.629
crgA
Hypothetical protein; Involved in cell division; Belongs to the CrgA family.
  
     0.617
GAT88680.1
Protein kinase.
     
 0.593
GAT87027.1
Membrane protein.
  
     0.592
GAT88634.1
Membrane protein.
  
     0.582
GAT87103.1
NAD-dependent deacetylase.
   
    0.574
GAT87773.1
Membrane protein.
  
     0.571
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
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