Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GAT88806.1alpha-L-rhamnosidase. (767 aa)    
Predicted Functional Partners:
GAT86315.1
Sulfatase modifying factor 1.
 
   0.689
GAT87405.1
Short-chain dehydrogenase.
 
 
  0.630
GAT88805.1
Hypothetical protein.
       0.620
GAT87121.1
Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
 
 
   0.606
rpsD
30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
   
 
  0.560
GAT87404.1
Carbohydrate kinase.
 
     0.519
GAT85625.1
alpha-L-fucosidase.
  
     0.498
GAT87438.1
Endo-1,4-beta-xylanase.
 
   0.478
GAT88807.1
Hypothetical protein.
       0.476
GAT88064.1
Beta-glucosidase.
     0.471
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.