Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
GAT88818.1CoA-transferase; Belongs to the CoA-transferase III family. (392 aa)    
Predicted Functional Partners:
GAT88819.1
enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
    
  0.817
GAT88820.1
FAD-dependent oxidoreductase.
    
  0.817
GAT88502.1
hydroxymethylglutaryl-CoA lyase; Belongs to the alpha-IPM synthase/homocitrate synthase family.
  
  0.586
GAT88817.1
Hypothetical protein.
       0.572
GAT88821.1
LacI family transcriptional regulator.
       0.524
GAT88162.1
3-hydroxyacyl-CoA dehydrogenase.
  
 
 0.511
GAT88816.1
Dihydrodipicolinate synthetase; Belongs to the DapA family.
       0.486
GAT86501.1
Succinate dehydrogenase.
     
  0.478
GAT88815.1
Hypothetical protein.
       0.472
GAT85467.1
enoyl-CoA hydratase.
  
 
 0.452
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
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