Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
GAT88884.1Oxidoreductase. (375 aa)    
Predicted Functional Partners:
GAT88885.1
Glutamine amidotransferase.
 
     0.948
GAT88888.1
Sugar ABC transporter substrate-binding protein.
 
     0.809
GAT88887.1
ABC transporter permease.
 
     0.784
GAT87924.1
Glutamine amidotransferase.
 
     0.774
GAT88886.1
ABC transporter permease.
 
     0.737
GAT87925.1
Oxidoreductase.
  
     0.693
GAT85369.1
Oxidoreductase.
  
     0.692
GAT88621.1
Hypothetical protein.
  
     0.622
GAT89258.1
Oxidoreductase.
  
     0.546
GAT87980.1
Xylose isomerase.
 
 
  0.522
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
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