Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
GAT88886.1ABC transporter permease. (284 aa)    
Predicted Functional Partners:
GAT88887.1
ABC transporter permease.
  0.985
GAT89301.1
Sugar ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.968
GAT88888.1
Sugar ABC transporter substrate-binding protein.
 
  0.955
GAT87983.1
Hypothetical protein.
 
 0.931
GAT87927.1
ABC transporter permease.
 0.926
GAT88017.1
Sugar ABC transporter permease.
 
  0.926
GAT89255.1
ABC transporter permease.
 
 0.923
GAT85368.1
Sugar ABC transporter permease.
  
 0.922
GAT89332.1
Sugar ABC transporter permease.
 
 0.896
GAT88029.1
Sugar ABC transporter permease.
  
  0.894
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
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