Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GAT88889.1LacI family transcriptional regulator. (340 aa)    
Predicted Functional Partners:
GAT87437.1
LacI family transcription regulator.
  
     0.773
GAT88615.1
LacI family transcriptional regulator.
  
     0.773
GAT86375.1
LacI family transcription regulator.
  
     0.769
GAT88234.1
LacI family transcriptional regulator.
  
     0.769
GAT87755.1
LacI family transcriptional regulator.
  
     0.767
GAT88031.1
LacI family transcriptional regulator.
  
     0.767
GAT87494.1
LacI family transcriptional regulator.
  
     0.751
GAT88205.1
Glutamate synthase.
    
 
 0.737
GAT89726.1
LacI family transcriptional regulator.
  
     0.734
GAT88888.1
Sugar ABC transporter substrate-binding protein.
 
  
  0.648
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
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