STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT88953.1L-cystine-binding protein tcyA. (271 aa)    
Predicted Functional Partners:
GAT88954.1
Cysteine ABC transporter permease.
  0.999
GAT88955.1
Arginine ABC transporter ATP-binding protein.
 
  0.994
GAT87418.1
Hypothetical protein.
  0.989
GAT87417.1
Hypothetical protein.
  0.987
GAT88846.1
Amino acid ABC transporter permease.
  0.979
GAT89400.1
Inner membrane amino-acid ABC transporter permease protein yecS.
  0.977
GAT85908.1
Amino acid ABC transporter permease.
 
  0.969
GAT89432.1
Amino acid ABC transporter permease.
 
  0.964
GAT88466.1
Polar amino acid ABC transporter inner membrane protein.
 
  0.960
GAT85486.1
Histidine kinase.
   
 0.950
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
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