STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT89112.1Oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (249 aa)    
Predicted Functional Partners:
GAT88166.1
Threonine aldolase.
    
  0.825
GAT88787.1
Malonic semialdehyde reductase.
    
  0.817
kbl
2-amino-3-ketobutyrate CoA ligase; Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA.
    
  0.777
GAT87764.1
Hypothetical protein.
    
  0.774
GAT88238.1
Oxidoreductase.
  
  
  0.728
GAT88646.1
Oxidoreductase.
  
  
  0.706
GAT89000.1
ACP S-malonyltransferase.
    
  0.681
GAT87550.1
Hypothetical protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  
  0.655
GAT89107.1
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
     0.600
GAT86638.1
Hypothetical protein.
 
  
  0.560
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
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