Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GAT89118.1Hypothetical protein. (448 aa)    
Predicted Functional Partners:
GAT89117.1
Hypothetical protein.
       0.773
GAT88982.1
Hypothetical protein; Belongs to the WXG100 family.
  
     0.747
GAT89116.1
Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
 
     0.648
GAT87272.1
hydroxymethylglutaryl-CoA lyase.
     
  0.560
GAT88502.1
hydroxymethylglutaryl-CoA lyase; Belongs to the alpha-IPM synthase/homocitrate synthase family.
     
  0.560
GAT86025.1
Hypothetical protein.
  
     0.549
GAT85963.1
Aminoglycoside phosphotransferase.
  
     0.517
GAT86023.1
Hypothetical protein.
  
     0.493
GAT87761.1
Membrane protein.
  
     0.450
GAT86022.1
Hypothetical protein.
  
     0.423
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
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