Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GAT89138.1ABC transporter substrate-binding protein. (575 aa)    
Predicted Functional Partners:
GAT89135.1
ABC transporter permease.
 
 0.986
GAT89136.1
ABC transporter permease.
 
 0.984
GAT89137.1
Peptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.970
GAT87716.1
ABC transporter; Belongs to the binding-protein-dependent transport system permease family.
 
 0.941
GAT88495.1
Hypothetical protein.
  
 0.932
GAT85891.1
Peptide ABC transporter permease.
 
 0.909
GAT86002.1
Peptide ABC transporter permease.
 
 0.908
GAT86001.1
Peptide ABC transporter permease.
 
 0.903
GAT85890.1
ABC transporter permease.
 
 0.902
GAT88268.1
ABC transporter permease.
 
 0.901
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
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