Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GAT89173.1Nuclease PIN. (205 aa)    
Predicted Functional Partners:
GAT89174.1
Phosphate transporter.
 
  
 0.976
GAT86693.1
Phosphate transporter.
 
  
 0.790
GAT86509.1
2'-5' RNA ligase.
  
     0.641
GAT88170.1
Hypothetical protein.
  
     0.626
GAT86344.1
Cyclase.
  
     0.583
GAT88140.1
Hypothetical protein.
  
     0.508
GAT87191.1
Hypothetical protein.
  
     0.498
GAT89172.1
Hypothetical protein.
       0.495
GAT87215.1
ABC transporter substrate-binding protein.
  
     0.493
GAT87463.1
Hypothetical protein.
  
     0.468
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
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