Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GAT85724.1LuxR family transcriptional regulator. (224 aa)    
Predicted Functional Partners:
GAT85723.1
Histidine kinase.
 
 0.965
GAT85486.1
Histidine kinase.
   
 0.961
GAT88791.1
Hypothetical protein HMPREF9020_01034.
 
  0.856
GAT89554.1
ATPase.
  0.855
GAT87240.1
Histidine kinase.
 
  0.847
GAT87602.1
Hypothetical protein.
 
  0.845
GAT86228.1
Histidine kinase.
 
  0.823
GAT86270.1
Hypothetical protein.
 
  0.820
GAT87229.1
Histidine kinase.
 
  0.812
GAT88930.1
Hypothetical protein.
  
  0.765
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
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