Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
GAT89258.1Oxidoreductase. (398 aa)    
Predicted Functional Partners:
GAT89257.1
Xylose isomerase.
 
  0.941
GAT89259.1
Xylose isomerase.
 
 
  0.896
GAT89255.1
ABC transporter permease.
       0.773
GAT89256.1
Sugar ABC transporter permease.
       0.773
GAT89260.1
Glucuronate isomerase.
       0.773
GAT89263.1
Gluconate kinase.
   
  0.755
GAT89254.1
ABC transporter substrate-binding protein.
       0.746
GAT89261.1
Oxidoreductase; Belongs to the mannitol dehydrogenase family.
       0.568
GAT87981.1
Oxidoreductase.
  
     0.560
GAT88884.1
Oxidoreductase.
  
     0.546
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
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