Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GAT89333.1Sugar-binding protein. (445 aa)    
Predicted Functional Partners:
GAT89332.1
Sugar ABC transporter permease.
 
 0.993
GAT89331.1
Sugar ABC transporter permease.
 
  0.992
GAT89301.1
Sugar ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 0.983
GAT88617.1
ABC transporter.
 
  0.966
GAT85683.1
Sugar ABC transporter permease.
 
 0.966
GAT85684.1
ABC transporter permease.
  
  0.930
GAT88618.1
ABC transporter permease.
  
  0.929
GAT88616.1
Sugar ABC transporter substrate-binding protein.
  
  
 
0.921
GAT87823.1
ABC transporter permease.
  
  0.917
GAT85682.1
Carbohydrate-binding protein.
  
  
 
0.917
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
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