Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
GAT85745.1Glycoside hydrolase. (477 aa)    
Predicted Functional Partners:
GAT85685.1
Glycosidase.
 
 
 0.928
GAT89282.1
Alpha-amylase.
 
 
 0.927
GAT85811.1
Glycoside hydrolase.
    
 0.915
GAT87345.1
Putative beta-glucosidase.
    
 0.910
GAT88064.1
Beta-glucosidase.
    
 0.910
GAT85569.1
Glycosyl hydrolase family 32.
   
 
 0.903
GAT89334.1
Glycoside hydrolase; Belongs to the glycosyl hydrolase 32 family.
   
 
 0.903
GAT89286.1
Alpha-amylase.
  
 
 0.902
GAT86365.1
Levansucrase; Belongs to the glycosyl hydrolase 68 family.
   
 
  0.900
GAT86807.1
Bifunctional dTDP-4-keto-L-rhamnose reductase/dTDP-4-keto-6-deoxyglucose-3,5-epimerase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
  
 
 0.714
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
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