Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
GAT89436.1succinyl-CoA:3-ketoacid-CoA transferase. (220 aa)    
Predicted Functional Partners:
GAT89437.1
succinyl-CoA:3-ketoacid-CoA transferase.
 0.999
GAT87364.1
3-oxoadipate CoA-transferase subunit A.
 0.998
GAT88626.1
succinyl-CoA:3-ketoacid-CoA transferase.
 0.998
GAT89548.1
succinyl-CoA:3-ketoacid-CoA transferase.
 0.998
GAT89438.1
Hypothetical protein.
   
   0.701
GAT88162.1
3-hydroxyacyl-CoA dehydrogenase.
  
 0.687
GAT86501.1
Succinate dehydrogenase.
   
  0.628
GAT87357.1
4-hydroxyphenylpyruvate dioxygenase.
  
  0.595
GAT86502.1
Succinate dehydrogenase; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
     
  0.591
GAT86093.1
Alpha-ketoglutarate decarboxylase.
   
 
 0.572
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
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