STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT89589.1Conjugal transfer protein. (581 aa)    
Predicted Functional Partners:
GAT89590.1
ATP/GTP-binding protein.
 
  
 0.947
GAT89591.1
Membrane protein.
 
   
 0.947
GAT89592.1
Hypothetical protein.
 
     0.941
GAT89588.1
Hypothetical protein.
     0.899
GAT89596.1
ATPase involved in chromosome partitioning.
 
     0.885
GAT89586.1
Relaxase.
 
   
 0.794
GAT89593.1
Hypothetical protein.
       0.751
GAT89598.1
Amidase.
 
     0.711
GAT86390.1
HNH endonuclease.
   
 
 0.688
GAT86988.1
HNH endonuclease.
   
 
 0.688
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
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