Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
GAT89589.1Conjugal transfer protein. (581 aa)    
Predicted Functional Partners:
GAT89590.1
ATP/GTP-binding protein.
 
  
 0.946
GAT89591.1
Membrane protein.
 
   
 0.943
GAT89592.1
Hypothetical protein.
 
     0.940
GAT89588.1
Hypothetical protein.
 
     0.897
GAT89596.1
ATPase involved in chromosome partitioning.
 
     0.882
GAT89586.1
Relaxase.
 
   
 0.800
GAT89593.1
Hypothetical protein.
       0.745
GAT89598.1
Amidase.
 
     0.711
GAT89594.1
Integral membrane protein, putatine.
       0.676
GAT89595.1
Hypothetical protein.
       0.636
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
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