Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GAT89687.1PucR family transcriptional regulator. (515 aa)    
Predicted Functional Partners:
GAT89686.1
MFS transporter.
 
     0.737
GAT89586.1
Relaxase.
  
     0.722
GAT89598.1
Amidase.
  
     0.636
GAT89685.1
Guanidinobutyrase; Belongs to the arginase family.
 
     0.608
GAT87758.1
AsnC family transcriptional regulator.
  
     0.590
GAT85998.1
Hypothetical protein.
  
     0.560
GAT87760.1
Membrane protein.
  
     0.528
GAT87761.1
Membrane protein.
  
     0.483
GAT86182.1
Amino acid permease.
  
     0.411
GAT89589.1
Conjugal transfer protein.
  
     0.410
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
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