STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT89783.1SGNH hydrolase. (255 aa)    
Predicted Functional Partners:
GAT86560.1
Glycosyl transferase.
 
      0.884
GAT88162.1
3-hydroxyacyl-CoA dehydrogenase.
  
  
 0.705
GAT89889.1
Hypothetical protein M707_18340; Belongs to the glycosyl hydrolase 28 family.
  
  0.705
GAT88178.1
Hypothetical protein.
   
  0.692
GAT89847.1
Hypothetical protein.
   
  0.692
GAT85972.1
Peptidase.
   
  0.692
GAT89782.1
MarR family transcriptional regulator.
       0.584
GAT86344.1
Cyclase.
  
     0.483
GAT85561.1
Hypothetical protein.
  
 
  0.477
secE
Preprotein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
     0.443
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
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