Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GAT89810.1Hypothetical protein. (241 aa)    
Predicted Functional Partners:
GAT86025.1
Hypothetical protein.
  
     0.767
GAT86069.1
Hypothetical protein.
  
     0.728
GAT86068.1
Pilus biosynthesis protein TadE.
  
     0.723
GAT86026.1
Hypothetical protein.
  
     0.699
GAT86065.1
Type II secretion system protein F.
  
     0.694
GAT86070.1
Hypothetical protein.
 
     0.615
GAT86024.1
DNA-binding protein.
  
     0.594
GAT87215.1
ABC transporter substrate-binding protein.
  
     0.562
GAT86023.1
Hypothetical protein.
  
     0.561
GAT87158.1
Universal stress protein UspA.
  
     0.536
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
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