STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT89819.1Ribokinase. (307 aa)    
Predicted Functional Partners:
GAT88363.1
PTS lactose transporter subunit IIC.
    
 0.878
GAT89799.1
5-deoxyglucuronate isomerase.
  
 
 0.811
GAT85569.1
Glycosyl hydrolase family 32.
 
  0.789
GAT88186.1
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
  
 0.784
GAT89334.1
Glycoside hydrolase; Belongs to the glycosyl hydrolase 32 family.
 
 
  0.774
pfkA
6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis; Belongs to the phosphofructokinase type A (PFKA) family. Mixed-substrate PFK group III subfamily.
   
 
 0.773
GAT86444.1
Fructose 1,6-bisphosphatase.
    
  0.763
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
 
 0.762
GAT86732.1
Glucose-6-phosphate isomerase; Belongs to the GPI family.
  
 
 0.759
GAT86442.1
Mannose-6-phosphate isomerase.
    
 0.751
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
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