Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
GAT85868.1LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (324 aa)    
Predicted Functional Partners:
GAT86598.1
Hypothetical protein; Belongs to the LysR transcriptional regulatory family.
  
     0.767
GAT86997.1
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.754
GAT89357.1
Hypothetical protein; Belongs to the LysR transcriptional regulatory family.
  
     0.743
GAT89107.1
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.735
GAT86215.1
ArsR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.686
GAT85867.1
Major facilitator transporter.
 
     0.673
GAT87343.1
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.601
GAT86309.1
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.555
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.484
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
   0.450
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
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