Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
GAT85959.1DNA polymerase III subunit epsilon. (236 aa)    
Predicted Functional Partners:
GAT87202.1
DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
 
 
 0.992
GAT88651.1
DNA polymerase III subunit alpha.
    
 0.987
GAT86895.1
DNA polymerase III subunit delta.
    
 0.985
GAT87770.1
DNA polymerase III subunit delta'.
    
 0.985
GAT88052.1
DNA polymerase III subunit gamma/tau.
    
 0.985
GAT86164.1
Exonuclease.
 
  
 0.927
GAT88918.1
5'-3' exonuclease.
 
  
 0.907
GAT85961.1
DNA helicase UvrD.
  
 
 0.897
GAT86970.1
DNA polymerase III subunit alpha; Belongs to the DNA polymerase type-C family. DnaE2 subfamily.
    
 0.876
GAT85962.1
ATP-dependent DNA helicase; Belongs to the helicase family. UvrD subfamily.
    
 0.875
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
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