Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GAT85961.1 | GAT85965.1 | CVCC1112_621 | CVCC1112_625 | DNA helicase UvrD. | ATP-dependent DNA helicase. | 0.996 |
GAT85961.1 | GAT86164.1 | CVCC1112_621 | CVCC1112_824 | DNA helicase UvrD. | Exonuclease. | 0.922 |
GAT85961.1 | GAT86171.1 | CVCC1112_621 | CVCC1112_831 | DNA helicase UvrD. | Chromosome segregation protein SMC. | 0.572 |
GAT85961.1 | GAT87202.1 | CVCC1112_621 | CVCC1112_1861 | DNA helicase UvrD. | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.898 |
GAT85961.1 | GAT87569.1 | CVCC1112_621 | CVCC1112_2228 | DNA helicase UvrD. | Helicase. | 0.693 |
GAT85961.1 | GAT88918.1 | CVCC1112_621 | CVCC1112_3577 | DNA helicase UvrD. | 5'-3' exonuclease. | 0.557 |
GAT85961.1 | GAT88927.1 | CVCC1112_621 | CVCC1112_3586 | DNA helicase UvrD. | ATP-dependent DNA helicase PcrA. | 0.685 |
GAT85961.1 | polA | CVCC1112_621 | CVCC1112_1358 | DNA helicase UvrD. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.768 |
GAT85961.1 | recA | CVCC1112_621 | CVCC1112_3218 | DNA helicase UvrD. | Recombinase RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.857 |
GAT85961.1 | topA | CVCC1112_621 | CVCC1112_56 | DNA helicase UvrD. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.661 |
GAT85965.1 | GAT85961.1 | CVCC1112_625 | CVCC1112_621 | ATP-dependent DNA helicase. | DNA helicase UvrD. | 0.996 |
GAT85965.1 | GAT86164.1 | CVCC1112_625 | CVCC1112_824 | ATP-dependent DNA helicase. | Exonuclease. | 0.971 |
GAT85965.1 | GAT86171.1 | CVCC1112_625 | CVCC1112_831 | ATP-dependent DNA helicase. | Chromosome segregation protein SMC. | 0.970 |
GAT85965.1 | GAT87202.1 | CVCC1112_625 | CVCC1112_1861 | ATP-dependent DNA helicase. | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.993 |
GAT85965.1 | GAT87569.1 | CVCC1112_625 | CVCC1112_2228 | ATP-dependent DNA helicase. | Helicase. | 0.989 |
GAT85965.1 | GAT88918.1 | CVCC1112_625 | CVCC1112_3577 | ATP-dependent DNA helicase. | 5'-3' exonuclease. | 0.978 |
GAT85965.1 | GAT88927.1 | CVCC1112_625 | CVCC1112_3586 | ATP-dependent DNA helicase. | ATP-dependent DNA helicase PcrA. | 0.979 |
GAT85965.1 | polA | CVCC1112_625 | CVCC1112_1358 | ATP-dependent DNA helicase. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.990 |
GAT85965.1 | recA | CVCC1112_625 | CVCC1112_3218 | ATP-dependent DNA helicase. | Recombinase RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.998 |
GAT85965.1 | topA | CVCC1112_625 | CVCC1112_56 | ATP-dependent DNA helicase. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.998 |
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