Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GAT85972.1Peptidase. (655 aa)    
Predicted Functional Partners:
GAT85971.1
Hypothetical protein.
     0.959
GAT87450.1
Alpha integrin.
  
 
  0.652
GAT85433.1
Hypothetical protein.
  
  
  0.616
GAT85486.1
Histidine kinase.
     
 0.611
GAT89030.1
Hypothetical protein.
   
 
  0.594
GAT86092.1
Lysophospholipase.
  
   0.569
GAT89352.1
SGNH hydrolase.
   
 
 0.495
GAT89779.1
SGNH hydrolase.
   
 
 0.495
GAT89780.1
SGNH hydrolase.
   
 
 0.495
GAT89783.1
SGNH hydrolase.
   
 
 0.495
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
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