Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
GAT85987.1Hypothetical protein; Belongs to the LysR transcriptional regulatory family. (305 aa)    
Predicted Functional Partners:
GAT88049.1
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.727
GAT87343.1
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.715
GAT86215.1
ArsR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.678
GAT85993.1
Hypothetical protein.
 
     0.549
GAT85986.1
Cysteine desulfarase.
       0.493
GAT85995.1
FAD-binding dehydrogenase.
 
     0.493
GAT86309.1
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.491
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.484
GAT85988.1
Major facilitator transporter.
       0.473
aroE
Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
       0.473
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
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