Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
GAT85997.1tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. (369 aa)    
Predicted Functional Partners:
GAT85986.1
Cysteine desulfarase.
 
 
 0.915
GAT85942.1
Molybdopterin biosynthesis MoeZ.
 
 
 0.890
GAT86199.1
Cysteine desulfarase.
 
 
 0.847
GAT88586.1
Riboflavin kinase; Belongs to the ribF family.
 
 
 0.817
GAT86289.1
Hypothetical protein.
  
 0.765
pheT
phenylalanyl-tRNA synthetase subunit beta; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
 
  
 0.719
GAT87764.1
Hypothetical protein.
  
    0.716
GAT85936.1
Thiamine biosynthesis protein ThiS.
  
 
  0.706
GAT88173.1
Cysteine desufuration protein SufE.
     
 0.689
argH
Argininosuccinate lyase.
  
  
  0.648
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
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