Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GAT86023.1Hypothetical protein. (181 aa)    
Predicted Functional Partners:
GAT86022.1
Hypothetical protein.
 
     0.905
GAT86025.1
Hypothetical protein.
 
     0.781
GAT86026.1
Hypothetical protein.
 
     0.778
GAT86065.1
Type II secretion system protein F.
  
     0.770
GAT86024.1
DNA-binding protein.
  
     0.756
GAT86069.1
Hypothetical protein.
  
     0.734
GAT86068.1
Pilus biosynthesis protein TadE.
  
     0.726
GAT86066.1
Type II secretion system protein F.
  
     0.695
GAT86509.1
2'-5' RNA ligase.
  
     0.609
GAT86092.1
Lysophospholipase.
  
     0.566
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
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