Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GAT86042.1Alpha integrin. (1031 aa)    
Predicted Functional Partners:
GAT86043.1
Hypothetical protein.
       0.773
GAT88116.1
Peptidase S41; Degrades oligopeptides; Belongs to the peptidase S41B family.
   
  0.633
GAT89321.1
Hypothetical protein.
     
  0.513
GAT86031.1
Cell division protein FtsK.
    
 
 0.478
GAT86331.1
Cell division protein FtsK.
    
 
 0.478
smc
Chromosome partitioning protein Smc; Required for chromosome condensation and partitioning. Belongs to the SMC family.
  
 
   0.464
GAT87396.1
Alpha integrin.
  
 
 
0.463
GAT85486.1
Histidine kinase.
   
 
 0.458
GAT88565.1
Cell division protein FtsK; Belongs to the FtsK/SpoIIIE/SftA family.
    
   0.456
GAT87353.1
Alpha integrin.
  
  
 
0.453
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
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